rs231754916 SNP Detail

Summary

• ID
  rs231754916
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:36004557 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCGTTTGGCT TGAACAGATA
  AGAACCTTAA TTTCCTAAGT ATGGTGACAA AACTATTTCC TTTGCAAAGA TGTGAGGTGC
  TCAGTTCCTT ATCATACTAG CAATTAGTAA ACCCATAATG TCATATTGTC ATCCTAATTA
  TCAGGTGAAT TTAGAGGGAA TGTGAGAGAA AATTCAAGTC TTCCTCGAGG ATAAATCATC
  Y
  GGAAATCATG AAACTAATGA AGATCCAAAA CTAAATGAAG ATCCAGCTCT ATAAACGAGG
  AGAGGTTCTT TCTGTGTTCA CAAACTCTTT AGTAGATTGC TTATGATTGG CAGCACTTTC
  CGGCTTACTG TTGATTCAAT AATAAGACTG CTTCATTTAT CTTCCACTTT TTGGCCATTT
  TATTTAGGTA AGCACACAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084811	CHEV_4_35951590	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231754916					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36004557 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm12369	predicted gene 12369			411 bp upstream
Lingo2	leucine rich repeat and Ig domain containing 2			Intron
				Noncoding-Transcript-Variant
Tssr41223	transcription start site region 41223			1447 bp downstream