rs231765331 SNP Detail

Summary

• ID
  rs231765331
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:140540056 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCGAAGATC AGACCACCAG
  GCCTAGGGAA CTCAGCACCG GAGTCAGGGC TACGGAATTG CGTTGACCTG TCCTGGATCC
  CGGTGCCTTG GAGCATCGCC CCCTTCTGCC AGCCTCCCCA CCTCTTTCCA TAAAACCAAG
  GGAAGAGGAG AGGAAGAGGA AGAGGAAGAG GCAGGTCCCT CCTCGATAGT ATCTCAGGCA
  R
  GCGGGGGGGG GGGGGGCGGC GCGGGGGAGT GGCCATGGAT CAAGGATTCT GTCGAATCAG
  CGGCTGTCTG GCATTCACCT GCCTCAGCCC AGGAAGCTGC TCAGCTGACA AGGGCCGCCT
  GAGGCCCTGC TGGCACCGAG CCTAGGGATC TGTGCTAGGG TGTGGAGATC AGGGAAGCTG
  GCCCCTCATT TTCTTATCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	SM/J	SPRET/EiJ
ss363504333	MGP_WTSI_4_140368660	EVA_MGPV3	EVA_MGPV3	f	SNP	A	G	G	G	G	G	G	G	G	G	G	A	G	A	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	B10.RIII-H2 H2-T18/(71NS)SnJ	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	CAST/EiJ	CBA/J	CZECHII/EiJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	SM/J	SPRET/EiJ
rs231765331					SNP	A	G	G	G	G	G	G	G	G	G	G	A	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363504333	MGP_WTSI_4_140368660	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:140540056 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15197	CpG island 15197	1855 bp proximal
Gm13032	predicted gene 13032	within coordinates
Padi1	peptidyl arginine deiminase, type I	238 bp downstream
Rr603553	regulatory region 603553	1742 bp distal
Rr603554	regulatory region 603554	1620 bp distal
Rr603555	regulatory region 603555	within coordinates
Rr603556	regulatory region 603556	87 bp distal
Tssr44282	transcription start site region 44282	1393 bp downstream