rs231768764 SNP Detail

Summary

• ID
  rs231768764
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:116901173 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTTCCTGG GGTGCAGAGT
  TCAATTCCCA GAAACTCCAT GGAGACTCAC AACCATCTAA TGCCCTCTTC TGGCATGCAG
  GTATACATGC AGATAGAGCA CTCATTCATA TATATATATA TATATATATA TATATATATA
  TATATATATA TTACATAAAT CATTTTTTAA AAGATTTCTC TTGGAATTGG AGAGATGGCC
  S
  AGGGTTAAGA GAACTGACTG CTCTTCCAGA GGTCGAGTTC AATTCCCAGC AACCACGTGG
  TGACTCACAA ACATCTGTAA TGGGATCCCA TGCCCTTTTC TGGTGTGTCT GAAGACAGCG
  ACAGTGTACT CACACACATA AATAATTCTT TAGAAAATAT TAATTTTTGC CGGGCGTGGT
  GGCACACGCC TTTAATCCCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323494037	CHEV_10_116502324	CHEVERUD	SCREENING_POP	f	SNP	G	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231768764					SNP	G	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:116901173 () rs orientation: forward

Symbol	Name	Function Class
Cct2	chaperonin containing TCP1 subunit 2	1454 bp upstream
Cpgi2223	CpG island 2223	1230 bp distal
Rr402250	regulatory region 402250	1235 bp downstream
Rr439433	regulatory region 439433	964 bp distal
Rr439434	regulatory region 439434	694 bp distal
Rr439435	regulatory region 439435	496 bp distal
Rr439436	regulatory region 439436	123 bp distal
Rr439437	regulatory region 439437	1601 bp proximal
Tssr99382	transcription start site region 99382	1902 bp upstream
Tssr99383	transcription start site region 99383	1516 bp upstream
Tssr99384	transcription start site region 99384	1466 bp upstream