rs231779363 SNP Detail

Summary

• ID
  rs231779363
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:49429459 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAGGCCCT GTTTTTTCTC
  CTTCCTTTTT TTTTTTTATA TCAAGACTGA GAGATCATTT AGCTAAGAGC TCATCAAAAT
  GAATGCTGGC ATGGGTAGAG TATTTTACCT TAAAGAGGAG GGGAAAGATA CTCGTGACCT
  ATGTGTCTCC ACCTCCCTCT CCTCTCTGGC TACGGCCTCT GCTTACAACG TGGCGCGCTT
  Y
  GAGCCAGTGA GGATTTGTGA TCTGTGTGCT CCGCACTAAA TTCCAATCCC TGGGAAATGC
  TGGGCCTTGG CCCTGGCCCT GGCCGCGATC TTTTTAAAGG CCTTGAATTA CAAGCTACCC
  ACTCGTTTCA ACCTCCCCAC CAAACCATCC CCCAAACCCC AGAAGCTAGG ACTGTCAAAT
  CCACCTTCCT TGGGCTCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss385922527	MGP_WTSI_12_50483663	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231779363					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss385922527	MGP_WTSI_12_50483663	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:49429459 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4581	CpG island 4581	285 bp proximal
Foxg1	forkhead box G1	207 bp upstream
Gm34304	predicted gene, 34304	848 bp upstream
Gm56518	predicted gene, 56518	1337 bp downstream
Rr465759	regulatory region 465759	within coordinates
Rr465760	regulatory region 465760	342 bp proximal
Rr465761	regulatory region 465761	1078 bp proximal
Tssr3838	transcription start site region 3838	1656 bp upstream
Tssr113389	transcription start site region 113389	681 bp downstream
Tssr113390	transcription start site region 113390	598 bp downstream
Tssr113391	transcription start site region 113391	9 bp downstream
Tssr113392	transcription start site region 113392	within coordinates
Tssr113393	transcription start site region 113393	115 bp upstream
Tssr113394	transcription start site region 113394	409 bp upstream
Tssr113395	transcription start site region 113395	1241 bp upstream
Tssr113396	transcription start site region 113396	1449 bp upstream
Tssr113397	transcription start site region 113397	1582 bp upstream
Tssr113398	transcription start site region 113398	1611 bp upstream
Tssr113399	transcription start site region 113399	1680 bp upstream
Tssr113400	transcription start site region 113400	1690 bp upstream
Tssr113401	transcription start site region 113401	1834 bp upstream
Tssr113402	transcription start site region 113402	1884 bp upstream
Tssr116231	transcription start site region 116231	846 bp upstream