rs231782125 SNP Detail

Summary

• ID
  rs231782125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117584155 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTCCCCC TTTCAGATTA
  CTTTAGTTTG TGTTGCCATA AGACCAGCAC ACGTTCAACT ATTCGTCCAT TTCATCTATA
  GTTACTTGAA TTTATTATAA ACATTAGCTT TTCCATTTTC TCTCTGCTGC TTGTTGTGCT
  GGTTGTTTTG TTTTGTTTTG TTTTGTTTTG TTTTTTTGTC AACTTGACAC AAGCTAGAGT
  Y
  AATTTGGGAA GAGAGACGCT CAATTAAGAA ACTGCTGCCA GCAAGTCAGC CAGAAGATGA
  GCCCGTGGGA CATTTTTTTC AAATGTTACT CCATGTGGGA GGCTCAGCTT ACTGGAAAGT
  GCCATCTTTC TGTAGGTGGT TCTGGGTTAG ATCAAGCAGG CTGACCAAAC CCTAGGAAGC
  AAGCTGCCAG GAAGCAGTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499195	CHEV_10_117185306	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231782125					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117584155 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2239	CpG island 2239	1595 bp distal
Gm66856	predicted gene, 66856	227 bp downstream
Rr439611	regulatory region 439611	1759 bp distal
Rr439612	regulatory region 439612	1409 bp distal
Slc35e3	solute carrier family 35, member E3	1892 bp upstream
Tssr99471	transcription start site region 99471	1900 bp upstream
Tssr99472	transcription start site region 99472	1832 bp upstream