rs231783450 SNP Detail

Summary

• ID
  rs231783450
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:70314795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCGCACAC GCCCCACCCC
  ACCCCCACGA CCCAGCGTCG CACCGCACCA GCCGAGGCAC CCGAGAGGAT TACCCTCTTT
  GCCCCTCTCC CATCCACCCC TCCAAAAAAG AATAGATCCC CTCCCCTGAC CCACCCCTTC
  CCCTTTTCAC TCCCCCCTCC CTCCGAACTT TCCCTCTCGC ATGCTTTTCC CCTGCACCAC
  K
  GATCGCCTCT CGGATGCCGC TCGCCTGGAA GCTGCGTTAG GAACAGGCGG CGGCGGCGGT
  GGCGGCGGCG GCGGTGGCGG CGGTAGCTCG GGAGTGCTAT GACCGGCAAA CTCGCCGAGA
  AGCTGCCGGT GACCATGAGC AGTTTGCTAA ATCAATTGCC TGACAATCTG TACCCCGAGG
  AGATCCCCAG CGCGCTCAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391459045	MGP_WTSI_14_70477153	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231783450					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391459045	MGP_WTSI_14_70477153	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:70314795 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6680	CpG island 6680	1146 bp distal
Cpgi6681	CpG island 6681	within coordinates
Egr3	early growth response 3	within coordinates
Gm63137	predicted gene, 63137	1620 bp downstream
Rr404186	regulatory region 404186	305 bp downstream
Rr494835	regulatory region 494835	1634 bp distal
Rr494836	regulatory region 494836	22 bp distal
Tssr126387	transcription start site region 126387	423 bp downstream
Tssr126388	transcription start site region 126388	411 bp downstream
Tssr126389	transcription start site region 126389	156 bp downstream
Tssr126390	transcription start site region 126390	124 bp downstream
Tssr126391	transcription start site region 126391	within coordinates
Tssr126392	transcription start site region 126392	29 bp upstream
Tssr126393	transcription start site region 126393	663 bp upstream
Tssr126394	transcription start site region 126394	1895 bp upstream