rs231784519 SNP Detail

Summary

• ID
  rs231784519
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155923865 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGATGATTG GCTGTTCCCG
  CTCCTAAAGA AATCTGGACC ACAATGCCAT CATGTTGTCC CCAGGGAGCC CACTATGGTC
  CCAGAGAAGG GCATAGTAAA ATCACCCTCA GTCAAAGTGA AATCAGAAGA CACCGGATCT
  GGCAGGGAGA ATACAAGAAG GTGGGGGTAG GGGTGGTGGT GGGGGTGGGG GTGGTGGGGT
  R
  GGGGAGCAGC CCAGGTTCTC TGGCCTGGCT GATCACATAG GAGGATGTCA GCGCAGAGGA
  TGCAGATCAA ACACCAGTTC TGTCGAAACT CAGGAAGTTT ACCAGATGCT TGGCACCCGC
  TTGGCCTCAG GAATCTTCAC ATCCAGGCCT CGTCTTCTGT CCCAGGACTG AGCTACTGCT
  CCTCCCCAAG ACTGACCAGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SM/J	WSB/EiJ	ZALENDE/EiJ
ss363804799	MGP_WTSI_4_155213517	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	A	G	G	A	G	G	A	A	A	G	G	A	G	G	A	A	A	A	A	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZO/HlLtJ	PL/J	QSi5/Ianm	RF/J	RIIIS/J	SM/J	WSB/EiJ	ZALENDE/EiJ
rs231784519					SNP	G	G	G	A	G	G	A	G	G	A	A	A	G	G	A	G	G	A	A	A	A	A	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363804799	MGP_WTSI_4_155213517	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155923865 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	1404 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	272 bp upstream
Mxra8os	matrix-remodelling associated 8, opposite strand	84 bp downstream
Rr398927	regulatory region 398927	1776 bp upstream
Rr606588	regulatory region 606588	1173 bp distal
Rr606589	regulatory region 606589	within coordinates
Rr606590	regulatory region 606590	760 bp proximal
Rr606591	regulatory region 606591	1676 bp proximal
Rr606592	regulatory region 606592	1703 bp proximal
Rr606593	regulatory region 606593	1739 bp proximal
Tssr40724	transcription start site region 40724	267 bp upstream
Tssr40725	transcription start site region 40725	285 bp upstream
Tssr40726	transcription start site region 40726	316 bp upstream
Tssr40727	transcription start site region 40727	361 bp upstream
Tssr40728	transcription start site region 40728	419 bp upstream
Tssr40729	transcription start site region 40729	1693 bp upstream
Tssr40730	transcription start site region 40730	1713 bp upstream
Tssr40731	transcription start site region 40731	1738 bp upstream
Tssr40732	transcription start site region 40732	1760 bp upstream
Tssr44980	transcription start site region 44980	1620 bp downstream
Tssr44981	transcription start site region 44981	1686 bp downstream