rs231795330 SNP Detail

Summary

• ID
  rs231795330
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151825366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTATAGCT GCCCCTGAGA
  AGCTCTGCCA GAGCTGCGGA TGTACACCGC CAAACATCGG GCTGAGCGTG AGGACCCCAA
  GAGGGAAGTT AGGGCAAGAA CTGTAAGGAG CTGAAGGGGT TTTCAGCCCC ATAGAAAGAG
  CAACAATATC AACCAACCAG ACCCCCCAAA GCTCCCAAGG AGTAAACCAA CCAAAGAGTA
  M
  ACAGGGGGTA CCCATGGCTC CAGCTGGATA TGTAGCAGAG AACTGCCCTA TCTGGCATCA
  CTTTGAGGGG AACCCCTTGG TCCTGTGGAG GCTTGATGAC CCAGGAGAGG GGAACGCTAG
  AGCATTGAGG CAGGAGTGGG TAGGCGAGTT GGGGAGCACC TCATAGAGGC AGGGGGAGGA
  CATAGGGGGC TTGTGGGGGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321028140	CHEV_3_151782693	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231795330					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151825366 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587460	regulatory region 587460			377 bp proximal
Rr587461	regulatory region 587461			1843 bp proximal
Tssr1098	transcription start site region 1098			367 bp downstream
Tssr32394	transcription start site region 32394			581 bp upstream