rs231796784 SNP Detail

Summary

• ID
  rs231796784
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:157120783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGTTTGAAA ACTGGATAAA CCCTCACTCA CCAGCCAATT
  ATTAATAATC TAAGTAATGC ATTAACCATA ATTTCCCAAA GTGGATAAAA TCAAATGTTA
  M
  GATAACGCTC CCCTCCCAAC CGGACCCTTT TAAAATTGGC CGGGCTGCGG GAGAGAACCG
  TGAGTGACAG CGCGTCCGGC CAGTCACTGT CACTGGCCA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320585267	CHEV_2_157104599	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231796784					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:157120783 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12571	CpG island 12571	within coordinates
Mroh8	maestro heat-like repeat family member 8	within coordinates
Rpn2	ribophorin II	235 bp upstream
Rr397441	regulatory region 397441	within coordinates
Rr568459	regulatory region 568459	within coordinates
Rr568460	regulatory region 568460	676 bp proximal
Tssr21228	transcription start site region 21228	135 bp upstream
Tssr21229	transcription start site region 21229	163 bp upstream
Tssr21230	transcription start site region 21230	202 bp upstream
Tssr21231	transcription start site region 21231	415 bp upstream
Tssr27165	transcription start site region 27165	649 bp downstream
Tssr27166	transcription start site region 27166	656 bp downstream
Tssr27167	transcription start site region 27167	693 bp downstream