rs231798250 SNP Detail

Summary

• ID
  rs231798250
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:58599888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGATCGCCGC CGCGTGGGGT
  CGCTTCTCTG CGACAGTGGA AGCCGGCAGC CCAGGGAAAG GACGTAGCCC GAGTCTCCCG
  ACCCTTCCCA GGGGACCTAC GCCGACCCGC ACCGACTCCA GCTAGAAGGG CAACTGCTGG
  CCCGGCGTGG GCGTGGAGGG CGCGCGAGTG CGCCGGGGGC GGGGCGGGGC TGGGCGGGGC
  K
  GGGGGCGGGG CTCGGAATCC CACGTTTCTT TTAGCCATTG ACGCGCTGGA GCAGCTGGCG
  ATCAGGCTAC TCGGCCGGTA GCTTGACACG CGGGGGCGGG ACCCGGAGTC GGGCGGGAGC
  CGCGCGAAGG CCTCGGGTGT GGCCCGGCAG TTAGGTACGA GGGTGGGCTC TTCAGTGGTT
  GGGACCTTAA CGCTAGGTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358103455	MGP_WTSI_3_58496389	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231798250					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	T	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358103455	MGP_WTSI_3_58496389	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:58599888 () rs orientation: forward

Symbol	Name	Function Class
4930593A02Rik	RIKEN cDNA 4930593A02 gene	122 bp upstream
Cpgi13205	CpG island 13205	1475 bp distal
Cpgi13206	CpG island 13206	within coordinates
Rr367441	regulatory region 367441	1672 bp downstream
Rr577266	regulatory region 577266	1578 bp distal
Rr577267	regulatory region 577267	1119 bp distal
Rr577268	regulatory region 577268	407 bp distal
Rr577269	regulatory region 577269	174 bp distal
Rr577270	regulatory region 577270	within coordinates
Rr577271	regulatory region 577271	164 bp proximal
Siah2	siah E3 ubiquitin protein ligase 2	67 bp upstream
Tssr29217	transcription start site region 29217	23 bp upstream
Tssr29218	transcription start site region 29218	144 bp upstream
Tssr33366	transcription start site region 33366	452 bp upstream
Tssr33367	transcription start site region 33367	344 bp upstream
Tssr33368	transcription start site region 33368	55 bp upstream
Tssr33369	transcription start site region 33369	24 bp upstream