rs231798646 SNP Detail

Summary

• ID
  rs231798646
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:75118805 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGCCTAACA CAAAGGCAAC
  GCGGCGAGTT GTTTCCTGGG TTTTAGGGAA GACGCACTCA ATCAGCAATG CCCAGGAAAG
  ATGAACAAGA AACTTACCGT AGGTGGGAGA ACTGTGAACA AGGTGGGAGG GAATCTGTTG
  AATCTTTATG CCCCTTAGAA GTTTGAAACT GTAACACTCG AATACATACT GTATTCTGTA
  K
  GGTTACTCCA GCAATTAAAT GATCTCAAAA GATATAAAGC CTCAATGTAC GATGTTAAAC
  AGGTCTCCCC AAAGCAAACA GCGCCTGGAT GTTTTATTTC CAAACACTCC TTCCACACAA
  TTTGCGGCTG AGAGATTTTG GGAAGAGAGA GGGCCGACGC TCCAAGAAGG AAGAAACAAC
  TTTTCGAAGT TGGTGAAGCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350135776	MGP_WTSI_1_75138735	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231798646					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350135776	MGP_WTSI_1_75138735	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:75118805 () rs orientation: forward

Symbol	Name	Function Class
Cnppd1	cyclin Pas1/PHO80 domain containing 1	within coordinates
Cpgi410	CpG island 410	94 bp distal
Cpgi411	CpG island 411	74 bp proximal
Gm57175	predicted gene, 57175	within coordinates
Retreg2	reticulophagy regulator family member 2	627 bp upstream
Rr29646	regulatory region 29646	within coordinates
Tssr7484	transcription start site region 7484	456 bp downstream
Tssr7485	transcription start site region 7485	363 bp downstream
Tssr7486	transcription start site region 7486	272 bp upstream
Tssr7487	transcription start site region 7487	341 bp upstream
Tssr7488	transcription start site region 7488	557 bp upstream
Tssr7489	transcription start site region 7489	601 bp upstream
Tssr7490	transcription start site region 7490	614 bp upstream
Tssr7491	transcription start site region 7491	652 bp upstream
Tssr7492	transcription start site region 7492	667 bp upstream
Tssr7493	transcription start site region 7493	1082 bp upstream
Tssr12350	transcription start site region 12350	646 bp upstream
Tssr12351	transcription start site region 12351	631 bp upstream
Tssr12352	transcription start site region 12352	617 bp upstream
Tssr12353	transcription start site region 12353	555 bp upstream
Tssr12354	transcription start site region 12354	513 bp upstream
Tssr12355	transcription start site region 12355	418 bp upstream
Tssr12356	transcription start site region 12356	358 bp upstream
Tssr12357	transcription start site region 12357	163 bp downstream
Tssr12358	transcription start site region 12358	199 bp downstream
Tssr12359	transcription start site region 12359	473 bp downstream