rs231801832 SNP Detail

Summary

• ID
  rs231801832
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:54493947 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCGCATGC GCCCTGGTGT
  TGCCGCTGTC GCCGCGGTGA GGGAAGTGGA CGCGATGGCC GGGTCCGCGT GGGTGTCCAA
  GGTGAGCGCT ACAGGGCAGC AAGCTCGAGG GCGAGCAGGG AGAGTAGGCT GTGATCCCGC
  CTGATGGATG GCGGAGGCGA GCGCGCGGAG GCGGCTCATG GCCCGCGGGC AGTGTTTCGG
  K
  GAATGTGGCC GGCACGCCGT GCGTGGCTAG CCCTGAGCCG GGACAGCCGC GCCGGGCGGG
  GACGGCGTCA AGGTCAAGGC GGCCAGTACT GCTCCGGGTG TCCCCACCAG TGTCCTCCAG
  GATAGGTGCA CAGGCCTCCC CCGGAGCCCT TGAGGGTCAC AGACAGGCCA CCTAGGCCCC
  GCGGCCCTGT CACCTGCGGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322965090	CHEV_9_54434470	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231801832					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:54493947 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21767	CpG island 21767	within coordinates
Idh3a	isocitrate dehydrogenase 3 (NAD+) alpha	within coordinates
Rr401372	regulatory region 401372	215 bp downstream
Rr679159	regulatory region 679159	142 bp distal
Rr679160	regulatory region 679160	within coordinates
Tssr85161	transcription start site region 85161	151 bp downstream
Tssr85162	transcription start site region 85162	365 bp upstream