rs231812597 SNP Detail

Summary

• ID
  rs231812597
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:40904302 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCGCCTAC CTGGCCACCC
  CGCCCATTGG CCCTCCTCGC CCTCTGTACG CCCCGCCCAG TAGCCTTCCT CGCCCTCTGC
  ACGCCCCGCC CCTGGCTGCC TCGCCCTCTG CATGCCCCGC CCTCAGGGAC AGTTACCGGC
  TCAGGCCGCG CGCGCCTCCG CAGCTCGCCA GAGATCCTTC AGACTGGCTG GAGCGCCGCG
  K
  TGTCGCCCGC GCCCGCTGAG GGCTCGCGGC TCGGGCGCGC CCGGCGCGAG TGGCGAGCTC
  CGGCCGTGCG CTGCGACGAG GCCAGGCGGC GGGCGGTTAG CGCTCCGCTC GGCGGGCGGG
  GAGGACGGGC ACGCCGGGCG CTGCACGCCT CGGCGGGCGG GTTCCGCGTC CCAGGACCGA
  AGCGGGTCGG TGCCCCCGTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357671136	MGP_WTSI_3_40753789	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs231812597					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357671136	MGP_WTSI_3_40753789	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40904302 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	within coordinates
Gm64655	predicted gene, 64655	342 bp upstream
Larp1b	La ribonucleoprotein 1B	within coordinates
Rr397652	regulatory region 397652	54 bp downstream
Rr575871	regulatory region 575871	353 bp distal
Rr575872	regulatory region 575872	29 bp distal
Rr575873	regulatory region 575873	187 bp proximal
Rr575874	regulatory region 575874	274 bp proximal
Rr575875	regulatory region 575875	936 bp proximal
Rr575876	regulatory region 575876	1689 bp proximal
Tssr28976	transcription start site region 28976	53 bp downstream
Tssr28977	transcription start site region 28977	15 bp downstream
Tssr28978	transcription start site region 28978	48 bp upstream
Tssr28979	transcription start site region 28979	78 bp upstream
Tssr28980	transcription start site region 28980	96 bp upstream
Tssr28981	transcription start site region 28981	535 bp upstream
Tssr28982	transcription start site region 28982	771 bp upstream
Tssr28983	transcription start site region 28983	912 bp upstream