rs231817145 SNP Detail

Summary

• ID
  rs231817145
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5914434 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCAAGTGG GTCTTCAGAC
  CACACTGCAC GCTGTGCAAT ATTTCTGTCC TGTTGGGTGA ATACTCTTGG ATGGCTAGGG
  CTCTCTCATT GATGCTCATA GTTCTAGAGA CTGTCAGAGG ATCTGGTTAA ACCTGTTAGG
  TTGGTGGGAG GGGGAGTGAT GTGTGTAAGG CTGGTTTTCT TTGTGTGGCT TACCAGGATC
  R
  TCATTAGAAA TGTCAACACT TGTAACTATA ACAACAAAAC AGGCTTAGTG ATCATCACTC
  ACTGTGACCA TTGGTCCAAC ACTGGAGAAA CCAAGAGAGG TCTCACCTCT ACTTTTCCTT
  CAGATTCCTA GAAACAGCTT TCCTCTAGAA TTCTCGGGGA AATAGATTCG CATTACAAAA
  GACTTTGTGA CCCACAATAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324224094	CHEV_13_5863681	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231817145					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5914434 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr387905	regulatory region 387905	1864 bp downstream
Rr403559	regulatory region 403559	105 bp upstream
Tssr118244	transcription start site region 118244	1814 bp downstream
Tssr118245	transcription start site region 118245	1563 bp downstream
Tssr118246	transcription start site region 118246	609 bp downstream
Tssr118247	transcription start site region 118247	539 bp downstream
Tssr118248	transcription start site region 118248	51 bp upstream
Tssr118249	transcription start site region 118249	256 bp upstream
Tssr118250	transcription start site region 118250	315 bp upstream
Tssr118251	transcription start site region 118251	335 bp upstream
Tssr118252	transcription start site region 118252	415 bp upstream
Tssr118253	transcription start site region 118253	1975 bp upstream
Tssr121319	transcription start site region 121319	121 bp upstream
Tssr121320	transcription start site region 121320	84 bp upstream
Tssr121321	transcription start site region 121321	73 bp upstream
Tssr121322	transcription start site region 121322	32 bp upstream