rs231834179 SNP Detail

Summary

• ID
  rs231834179
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20811183 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGGCCA CAGTCCAGAT
  TCAGGACCTG AACTGTGACC CTGACTTAAG ATCCTGCAGG GTTTTTAAGC CTCAAATCCA
  CAAACATCTG GGCCAAGTCA CATCACCAAT CAGGATTCAG AAATGGGGGG TTTACCTGGG
  AACATGGTTT TGCCTTACAC GTATCCTGCT CCCATTGGTT GGGTATTCAA CGGTGGCAAG
  R
  GACTTTCCTT GTTGAACATT CATGTCTCAA TGTGCCAACC AGGTTGTCAG TTACCCACGC
  ACATGTCTTT CTGCCAAGTA GGATGCCAGT TTCCAGGGAG GTCTTGGGAA CTTAAACTTT
  ACTCAGTCAT TACTCAAAAT GGAAGTCTTA TTCCAAAGGG TTTCTTATAT TGGTGCAGTT
  CTCTCTCTCA TCTATTTATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376856044	MGP_WTSI_9_20704331	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231834179					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376856044	MGP_WTSI_9_20704331	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20811183 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21406	CpG island 21406	1110 bp distal
Eif3g	eukaryotic translation initiation factor 3, subunit G	1297 bp upstream
Rr401258	regulatory region 401258	1638 bp upstream
Rr674623	regulatory region 674623	774 bp distal
Rr674624	regulatory region 674624	1191 bp distal
Rr674625	regulatory region 674625	231 bp proximal
Rr674626	regulatory region 674626	1636 bp proximal
Rr674627	regulatory region 674627	1769 bp proximal
Tssr2789	transcription start site region 2789	1312 bp upstream
Tssr2790	transcription start site region 2790	1301 bp upstream
Tssr83934	transcription start site region 83934	1972 bp downstream
Tssr88340	transcription start site region 88340	1256 bp upstream