rs231837343 SNP Detail

Summary

• ID
  rs231837343
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3308529 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGATGTAAGT TTTTTCAGCC
  AGTTTATTAA GTTTTGATTT TACAGAGAGA AATCTAGTAG TTTTGCTTCT TTAAACCTAT
  TATAAAAATT TTAGACATTG AGACTAGGAT AGGGCTCTTT TTCGTTGATA TACTAGCCAG
  GTGTATCCCA ATTCACTTGT TGAAATAACA TATGTTGGCC CTACACGTAA TTTTTTCATG
  Y
  GTTCATGATA ATTCTATAAG CATGTTAACA AGTGGGTTTA TAAATTTGTT CCAGAGTCTT
  GAAGATGAAG ACTTCTGTAA AACTGTGACC TCAGCTACTG CCAATAAAAC TGCGGAGCCC
  TCAGAGGCTC ATAGCCACCA CAAACACCAC AACAAACATG GGCAGGAGCA TCTTGGCAGC
  AGTAAGCCTT CAGAGAATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392857642	MGP_WTSI_15_3229047	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231837343					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392857642	MGP_WTSI_15_3229047	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3308529 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	1023 bp downstream
Rr498565	regulatory region 498565	1436 bp distal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	210 bp upstream
Tssr130395	transcription start site region 130395	1852 bp downstream
Tssr130396	transcription start site region 130396	1815 bp downstream
Tssr130397	transcription start site region 130397	74 bp upstream
Tssr130398	transcription start site region 130398	110 bp upstream
Tssr130399	transcription start site region 130399	218 bp upstream
Tssr130400	transcription start site region 130400	238 bp upstream
Tssr130401	transcription start site region 130401	252 bp upstream
Tssr130402	transcription start site region 130402	320 bp upstream
Tssr130403	transcription start site region 130403	352 bp upstream
Tssr130404	transcription start site region 130404	392 bp upstream
Tssr130405	transcription start site region 130405	412 bp upstream
Tssr130406	transcription start site region 130406	443 bp upstream
Tssr130407	transcription start site region 130407	477 bp upstream
Tssr130408	transcription start site region 130408	513 bp upstream
Tssr130409	transcription start site region 130409	522 bp upstream
Tssr130410	transcription start site region 130410	543 bp upstream
Tssr130411	transcription start site region 130411	599 bp upstream
Tssr130412	transcription start site region 130412	674 bp upstream
Tssr130413	transcription start site region 130413	927 bp upstream
Tssr130414	transcription start site region 130414	975 bp upstream
Tssr130415	transcription start site region 130415	1049 bp upstream
Tssr130416	transcription start site region 130416	1346 bp upstream
Tssr133563	transcription start site region 133563	142 bp downstream
Tssr133564	transcription start site region 133564	214 bp downstream
Tssr133565	transcription start site region 133565	262 bp downstream
Tssr133566	transcription start site region 133566	268 bp downstream
Tssr133567	transcription start site region 133567	515 bp downstream
Tssr133568	transcription start site region 133568	586 bp downstream