rs231851615 SNP Detail

Summary

• ID
  rs231851615
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:5789193 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCGTGTTT TACTTGCATG
  TGTAGCTGTA CCCCACGTAC ATGTTTGGTG CCGTCGAGTG AGAATGTTTC AGATCCTTGG
  AACTTGAGTT AAGAACATTT GTGAGCCGCT GCCCCTGTGA ATGCTGGGAA TCTAACTCAG
  GTCCTCAGCA GGAACAAGTG CTCTTAACCA ATAAGTCATC TCTCTAGCCC CTTAAAAAAA
  W
  TTTTTTTTAA TTATGTGCTT AATTGTTTTG CCTGAATGCA TGCATGTACA CCACGTGTAT
  GCCTGGTGCG GGCAGAGATC TTGAACTGCA GTTAAAGATG GCTGGGAACT GAACCTGGGC
  TCTCTGCAAG AGCAGCAAGT GCTCTTAACT CCCAAGCTAT CTCTCCAGCC CCATTGGAAG
  ATTTTTGTGA TCTAAGGAGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
ss382286036	MGP_WTSI_11_5739196	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BR/cdJ	C57L/J	CBA/J	CZECHII/EiJ	DBA/1J	DBA/2J	JF1/MsJ	LEWES/EiJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	PWK/PhJ	RF/J	SM/J	ST/bJ	WSB/EiJ	ZALENDE/EiJ
rs231851615					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	T	T	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss382286036	MGP_WTSI_11_5739196	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:5789193 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2542	CpG island 2542	1129 bp distal
Polm	polymerase (DNA directed), mu	1177 bp upstream
Rr369123	regulatory region 369123	1250 bp downstream
Rr385539	regulatory region 385539	295 bp upstream
Rr442170	regulatory region 442170	687 bp distal
Rr442171	regulatory region 442171	1143 bp distal
Tssr106647	transcription start site region 106647	1457 bp upstream
Tssr106648	transcription start site region 106648	1435 bp upstream
Tssr106649	transcription start site region 106649	1358 bp upstream