rs231856232 SNP Detail

Summary

• ID
  rs231856232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:43485611 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTACACAG TGACTCATGC
  ACCCTAGGCC CCTCCTCTAG ACCTGTAGAC AGTGTTTGAC TTACCAGCTT CTCCACAGCC
  TTCAAGGCTT ACATAAAAAA TACATCTCCA CCACTTTTGT TGTTGTTGTT TTGTTTTTGA
  GGCAGGGCTT CTCTGGGAAG CCTTGACTGA GCTGGAACTC ACTCTGTAGA CAAGGTTGGC
  Y
  TAAAAACTCA GAGATCTTCT TGCCCGCCTC TCTCTCCTGA GTGATGGGAT TTAAGGCATG
  CACCACCACC AAAGCCAGCC TCTCCACCAC TTTTTTAACA TCTGAATGCC TTTTAGCCAA
  AGAAACAGTA AGATCCAATA TGTATTCAGG GTAAAATGCT GGGGCTAGAC ATGATGAGAG
  TTGCCAAACT TGGTTACCTG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325162105	CHEV_16_43665361	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231856232					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:43485611 () rs orientation: forward

Symbol	Name	Function Class
Rr516192	regulatory region 516192	612 bp distal
Tigit	T cell immunoreceptor with Ig and ITIM domains	1102 bp upstream
Tssr138525	transcription start site region 138525	689 bp downstream
Tssr141141	transcription start site region 141141	1122 bp upstream
Tssr141142	transcription start site region 141142	1107 bp upstream
Tssr141143	transcription start site region 141143	1090 bp upstream
Tssr141144	transcription start site region 141144	840 bp upstream
Tssr141145	transcription start site region 141145	213 bp upstream