rs231857383 SNP Detail

Summary

• ID
  rs231857383
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:19431629 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGCAGCTC TTCCTGGACC
  TGGTCAGACA GCGTCTGCAC CCAGCGCAGG TAATCCCAGA AGCGGTTCAG GGCCTGCTCC
  CAGGGTTGGT TGCTTTGCCA CTCGAGCTGA TCTGTCACCT CCGGCTCTCC CTCGGCTAGG
  CATCCTGTGT AGAGTAAGTT TAAGGCTGGG TCAGGACCTA CAGTCTTTTT GGGTCTCTTT
  K
  AAGTGGGTCT GGAGGCTGTG GAGTCTGTTT AGATACTACA AGCATGCACT GTCTTGTATC
  CTATGTAGTT CAGAGCCGAG ACTAGGCAGG TGTGGAATTA GAAAATGTAT ACCCCACTTT
  TAAGAGCAAC TAAGAAATCA ACTTTTTATT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTACCC TTGGAGGTCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370754807	MGP_WTSI_7_20283053	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231857383					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370754807	MGP_WTSI_7_20283053	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19431629 () rs orientation: forward

Symbol	Name	Function Class
Apoe	apolipoprotein E	within coordinates
Cpgi18507	CpG island 18507	626 bp distal
Cpgi18508	CpG island 18508	695 bp proximal
D7Mit57	DNA segment, Chr 7, Massachusetts Institute of Technology 57	67 bp proximal
Gm71725	predicted gene, 71725	within coordinates
Rr155346	regulatory region 155346	1029 bp distal
Rr155347	regulatory region 155347	1972 bp proximal
Rr167194	regulatory region 167194	within coordinates
Tssr2112	transcription start site region 2112	1243 bp downstream
Tssr2113	transcription start site region 2113	1213 bp downstream
Tssr2114	transcription start site region 2114	1087 bp downstream
Tssr2115	transcription start site region 2115	1059 bp downstream
Tssr2116	transcription start site region 2116	989 bp downstream
Tssr2117	transcription start site region 2117	935 bp downstream
Tssr2118	transcription start site region 2118	840 bp downstream
Tssr2119	transcription start site region 2119	863 bp upstream
Tssr2120	transcription start site region 2120	790 bp downstream
Tssr2121	transcription start site region 2121	764 bp downstream
Tssr2122	transcription start site region 2122	39 bp upstream
Tssr64880	transcription start site region 64880	1430 bp downstream
Tssr64881	transcription start site region 64881	1367 bp downstream
Tssr64882	transcription start site region 64882	1308 bp downstream
Tssr64883	transcription start site region 64883	1291 bp downstream
Tssr64884	transcription start site region 64884	1263 bp downstream
Tssr64885	transcription start site region 64885	1185 bp downstream
Tssr64886	transcription start site region 64886	1150 bp downstream
Tssr64887	transcription start site region 64887	1132 bp downstream
Tssr64888	transcription start site region 64888	914 bp downstream
Tssr64889	transcription start site region 64889	807 bp downstream
Tssr64890	transcription start site region 64890	773 bp downstream
Tssr64891	transcription start site region 64891	745 bp downstream
Tssr64892	transcription start site region 64892	714 bp downstream
Tssr64893	transcription start site region 64893	620 bp downstream
Tssr64894	transcription start site region 64894	206 bp downstream
Tssr64895	transcription start site region 64895	127 bp downstream
Tssr64896	transcription start site region 64896	103 bp downstream
Tssr70973	transcription start site region 70973	1375 bp upstream
Tssr70974	transcription start site region 70974	1342 bp upstream
Tssr70975	transcription start site region 70975	1317 bp upstream
Tssr70976	transcription start site region 70976	1265 bp upstream
Tssr70977	transcription start site region 70977	1244 bp upstream
Tssr70978	transcription start site region 70978	1221 bp upstream
Tssr70979	transcription start site region 70979	1213 bp upstream
Tssr70980	transcription start site region 70980	1199 bp upstream
Tssr70981	transcription start site region 70981	1175 bp upstream
Tssr70982	transcription start site region 70982	1146 bp upstream
Tssr70983	transcription start site region 70983	1125 bp upstream
Tssr70984	transcription start site region 70984	1065 bp upstream
Tssr70985	transcription start site region 70985	1030 bp upstream
Tssr70986	transcription start site region 70986	1001 bp upstream
Tssr70987	transcription start site region 70987	956 bp upstream
Tssr70988	transcription start site region 70988	937 bp upstream
Tssr70989	transcription start site region 70989	899 bp upstream
Tssr70990	transcription start site region 70990	880 bp upstream
Tssr70991	transcription start site region 70991	850 bp upstream
Tssr70992	transcription start site region 70992	838 bp upstream
Tssr70993	transcription start site region 70993	809 bp upstream
Tssr70994	transcription start site region 70994	794 bp upstream
Tssr70995	transcription start site region 70995	761 bp upstream
Tssr70996	transcription start site region 70996	735 bp upstream
Tssr70997	transcription start site region 70997	669 bp upstream
Tssr70998	transcription start site region 70998	649 bp upstream
Tssr70999	transcription start site region 70999	593 bp upstream
Tssr71000	transcription start site region 71000	182 bp upstream
Tssr71001	transcription start site region 71001	116 bp upstream
Tssr71002	transcription start site region 71002	97 bp upstream
Tssr71003	transcription start site region 71003	69 bp upstream
Tssr71004	transcription start site region 71004	51 bp upstream
Tssr71005	transcription start site region 71005	287 bp downstream
Tssr71006	transcription start site region 71006	320 bp downstream
Tssr71007	transcription start site region 71007	378 bp downstream
Tssr71008	transcription start site region 71008	484 bp downstream
Tssr71009	transcription start site region 71009	502 bp downstream
Tssr71010	transcription start site region 71010	646 bp downstream
Tssr71011	transcription start site region 71011	679 bp downstream
Tssr71012	transcription start site region 71012	715 bp downstream
Tssr71013	transcription start site region 71013	1341 bp downstream
Tssr71014	transcription start site region 71014	1890 bp downstream