rs231872415 SNP Detail

Summary

• ID
  rs231872415
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:21397835 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    gtacagtga caggcaggta ggtcaatggg
  atagaattga agacccagaa atgaacccac acacatatga tcatttgatc tttgacaaag
  gaactaaaac cattcagtgg aaaaaaagac agcattttca acaaatggtg ctggctcaac
  Y
  ggtggttagc atgtagaaga atgcaatttg atccattttt atctccttgt acaaagctca
  agtccaagtg acctccacat aaaaccagat acactgaaac taattgaaga gaaagtaggg
  aagagcctca agcatatggg cacagggaaa                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319656533	CHEV_1_21317692	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231872415					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:21397835 () rs orientation: forward

Symbol	Name	Function Class
Gm71569	predicted gene, 71569	within coordinates
Gm71652	predicted gene, 71652	1778 bp upstream
Rr408408	regulatory region 408408	547 bp distal
Tssr11096	transcription start site region 11096	1871 bp upstream