rs231875208 SNP Detail

Summary

• ID
  rs231875208
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87828728 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTAGCCCC TGGTCTCGTG
  AGTTTTTTAC TTATAAGTCA GATATATGGG GGAGGGGGTT GAATACAGAT GTTCCCATGG
  ATGGAAGATA CATTACCTCT TTGTTTTCTC ATTTGTAAAG ATAGCCTGTG AGGAGTGTCA
  GTGAGATGAA GTCCTCTACG AAAGAGAGTC AGTGCTTTAA TAACAGTCCT GGAGCTATAT
  R
  GAGCTATATA GCTGGATATG GTGCTATACA CCTTTAGTCC TGGCACTAGG GAAGGAGAGC
  GAAGGAGAAG GATTTGTGAG TTCGAGGTCA GCCTTGTCTA CACAATGAGT TCTAGGTCAG
  CGAAGGATAT ATATATATAT ATATATAGTG AGACCCTGTC TCAAAAAGCA AACATTCCTT
  CCTTTCTCTC TCTCTCTTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320835509	CHEV_3_87725343	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231875208					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87828728 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13346	CpG island 13346	1564 bp distal
Mettl25b	methyltransferase like 25B	1180 bp downstream
Mrpl24	mitochondrial ribosomal protein L24	within coordinates
Rr367453	regulatory region 367453	1868 bp downstream
Tssr29862	transcription start site region 29862	1924 bp downstream
Tssr29863	transcription start site region 29863	1895 bp downstream
Tssr29864	transcription start site region 29864	1863 bp downstream
Tssr29865	transcription start site region 29865	1845 bp downstream
Tssr29866	transcription start site region 29866	1744 bp downstream
Tssr29867	transcription start site region 29867	1708 bp downstream
Tssr29868	transcription start site region 29868	474 bp upstream