rs231882800 SNP Detail

Summary

• ID
  rs231882800
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:45455511 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCTGTGAA TCTTTTCACT
  AGGGGCTGCT TTCACATATT TCCTGATGTC ATGCTATCTA TTGGTAACAG CTGATGAGGG
  CTGTGTGCGT AGGTTATTAA CATTGCTATT TGTATTGTTA ACTTATATCC GGCATTTTGC
  ATAAATATGA TATAAAAGGC TTTGATAATA TTTCCTGGTT TTAAACATTT TATATTTAAA
  Y
  ATATTTATAT ATTTTGTATA TTTTAATTAT AGAAAGATTT GATAATAAAA ATAAAGAAAA
  ATCTGTCATT CTATTCACAA TAGTAAACAA TCTTTTTGCA TTTTTACCTA ACATTTTTCA
  TACAGTGTCT TGTTTTGTGT TTAGAAAACA TCGTGGATGT GTATCCATAA ATGTAGTTAA
  TGATTTGGCA GGACTTGGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
ss380241458	MGP_WTSI_10_45299221	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C57BL/6J	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	I/LnJ	KK/HlJ	LEWES/EiJ	MA/MyJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	ZALENDE/EiJ
rs231882800					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380241458	MGP_WTSI_10_45299221	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:45455511 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1519	CpG island 1519	555 bp distal
Gm3805	predicted gene 3805	1304 bp upstream
Gm47504	predicted gene, 47504	1804 bp upstream
Hace1	HECT domain and ankyrin repeat containing, E3 ubiquitin protein ligase 1	within coordinates
Rr224766	regulatory region 224766	310 bp distal
Rr224767	regulatory region 224767	89 bp proximal
Tg(SRY-YFP,Tyr)TashTNpln	transgene insertion TashT, Nicolas Pilon	within coordinates
Tssr93194	transcription start site region 93194	1501 bp downstream
Tssr93195	transcription start site region 93195	1487 bp downstream
Tssr97528	transcription start site region 97528	1304 bp upstream
Tssr97529	transcription start site region 97529	1288 bp upstream