rs231887052 SNP Detail

Summary

• ID
  rs231887052
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:3309760 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATTTTCCAG TTTTTTTTTT
  CTTTACTTAA ACTCTGAAAA CAACAGAAAC TTTGTCTTCC TACTCTTACA TTCTAAACCG
  ATGAAATCTT TAACAGATTA CACTTTAAAT ATCTACTCAT CATTTTCTCT CTCAGAGTCC
  TAGCTTGAGT TGCACTGCAT GTATCTGTGC ATCTTGTTCT CTTCATTTAA TGCTGTACTG
  Y
  TCTGCTGAGC TCTGAGGGAC TATCTTGAGA GATGTAATGG AAGGAAAGCG TGGTGTTAAT
  CTGCGTACTG CTTAAGACAG TATTTCCATA ATCAATGATG GTTTCATAGA GAAACTAAGT
  CCTATGAACC TGACCTCTTT TATGGCTAAT ACGACTAAGC AAGAATGGAG TACAGAATTA
  AGTGGCTACA GTACACACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392857659	MGP_WTSI_15_3230278	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231887052					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392857659	MGP_WTSI_15_3230278	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:3309760 () rs orientation: forward

Symbol	Name	Function Class
Ccdc152	coiled-coil domain containing 152	within coordinates
Rr498566	regulatory region 498566	1021 bp proximal
Selenop	selenoprotein P	within coordinates
Tssr4538	transcription start site region 4538	1018 bp downstream
Tssr130397	transcription start site region 130397	1148 bp downstream
Tssr130398	transcription start site region 130398	1095 bp downstream
Tssr130399	transcription start site region 130399	1006 bp downstream
Tssr130400	transcription start site region 130400	982 bp downstream
Tssr130401	transcription start site region 130401	974 bp downstream
Tssr130402	transcription start site region 130402	910 bp downstream
Tssr130403	transcription start site region 130403	863 bp downstream
Tssr130404	transcription start site region 130404	821 bp downstream
Tssr130405	transcription start site region 130405	803 bp downstream
Tssr130406	transcription start site region 130406	777 bp downstream
Tssr130407	transcription start site region 130407	741 bp downstream
Tssr130408	transcription start site region 130408	711 bp downstream
Tssr130409	transcription start site region 130409	694 bp downstream
Tssr130410	transcription start site region 130410	668 bp downstream
Tssr130411	transcription start site region 130411	620 bp downstream
Tssr130412	transcription start site region 130412	539 bp downstream
Tssr130413	transcription start site region 130413	301 bp downstream
Tssr130414	transcription start site region 130414	247 bp downstream
Tssr130415	transcription start site region 130415	170 bp downstream
Tssr130416	transcription start site region 130416	115 bp upstream
Tssr133563	transcription start site region 133563	1041 bp upstream
Tssr133564	transcription start site region 133564	1010 bp upstream
Tssr133565	transcription start site region 133565	966 bp upstream
Tssr133566	transcription start site region 133566	954 bp upstream
Tssr133567	transcription start site region 133567	703 bp upstream
Tssr133568	transcription start site region 133568	576 bp upstream