rs231893936 SNP Detail

Summary

• ID
  rs231893936
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122520081 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    CCCGCTAGC ATGCTTTCTG TCTGCCTTGA
  AGACCTTGTC TCAGTTCTGG TAAATGTCAG CCTACTGCCG GAGCTGTCTC TTCAAGGGTG
  ATGTATGAGG CTGCTGAGGG TCCTGTGTCC TTAAGTCACA GCAGCGCCCC ATCCCCCGAC
  Y
  CTCACTGCAC TGTGCAGACG TGGAGATAAG TTTAAGTAAA GCCGTGGGGT ACGGTTCAAC
  CTTTCCCACC GAAGGGGTTC TACTCTCTCC CTCGGCCAAC ATCCACTCTA TGTAGGGGTG
  TCCCCACCAA CTTACCTCCA ACAAAAGGCT                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322844747	CHEV_8_124317242	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231893936					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122520081 () rs orientation: forward

Symbol	Name	Function Class
Rr671926	regulatory region 671926	252 bp distal
Tssr79823	transcription start site region 79823	1003 bp downstream
Tssr79824	transcription start site region 79824	870 bp downstream
Tssr79825	transcription start site region 79825	854 bp downstream
Tssr83237	transcription start site region 83237	1153 bp upstream
Tssr83238	transcription start site region 83238	1132 bp upstream
Tssr83239	transcription start site region 83239	1110 bp upstream
Tssr83240	transcription start site region 83240	1069 bp upstream
Tssr83241	transcription start site region 83241	993 bp upstream