rs231895752 SNP Detail

Summary

• ID
  rs231895752
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117938709 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCTTCTGAG ATACTATTCT
  GAATGACAAC CAAGTATTCA TTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCAGTGTTT
  TCGAGACAGG GTTTCTCTGT ATAGCCCTGG CCGTCCTGGA ACTCACTTTG TAGACCAGGC
  TAGCCTTGAA CTCAGAAATC TACCTGCCTC TACCTCCCGA GTGCTGGTAT TAAAGGCGTG
  Y
  GCCACCACAA GTATTCTATC TTTATAAATG ACCATGAGAA CAACATTCTA TAGACACACC
  TGGTGTTTCT TCAGGCTAAA TTCCCCAAGT GTAGACAAGA CAACCTTTAA GGCTTTTGAT
  ACATGCTTTT AAATTGCCTC AGAAGGAGAA GTTTCTGGCA GGATGGTACC CCCCCCCCCG
  CACCCCGCAC CACCCCCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323501462	CHEV_10_117539860	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231895752					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117938709 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2246	CpG island 2246	394 bp proximal
Gm66186	predicted gene, 66186	219 bp downstream
Gm66289	predicted gene, 66289	1597 bp upstream
Rr369079	regulatory region 369079	407 bp upstream
Rr402279	regulatory region 402279	1815 bp downstream
Tssr3367	transcription start site region 3367	834 bp downstream
Tssr99497	transcription start site region 99497	437 bp downstream