rs231903129 SNP Detail

Summary

• ID
  rs231903129
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:63217427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACTGGGGT TGGGGGTGGA TCTCAGTCGT
  AGAGCACTGT GGGATGGCTG AGGTCCGGGA TCAGCCTTCA GTCACACACA CCCAAGCACC
  GCTCCCCCTC AACCTAACGT TTTAGAACAG CTAGGTAGTG GTACATGCCC TGCTTCCGCA
  Y
  CCTTAACACC GTTTCGTTCC GTACTCCGTA CCTAACCGTG GCATCAGCTG CTTTCACCGT
  CGCCCTGGTT ATAAGTTGCT ACTGTGGCAG CCCCCggaga tggagttgtc gcttggttgg
  taggatatgc gtagcgctgg aatgcctggg                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323333505	CHEV_10_62844396	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231903129					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:63217427 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1649	CpG island 1649	within coordinates
Cpgi1650	CpG island 1650	684 bp proximal
Dnajc12	DnaJ heat shock protein family (Hsp40) member C12	795 bp upstream
Gm66647	predicted gene, 66647	209 bp downstream
Rr215754	regulatory region 215754	1174 bp proximal
Rr224928	regulatory region 224928	within coordinates
Rr369009	regulatory region 369009	421 bp upstream
Tssr97916	transcription start site region 97916	1096 bp downstream