rs231905432 SNP Detail

Summary

• ID
  rs231905432
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr15:34098523 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGGGCAAG TAGGAACCAT
  TCTGATTACA AAGTGGATTT GGAGATCATA GACTTGATTC TGCCCACAAA CACCCTCATT
  TTTAAAATGT TAGGGATGAA GTAATTGTTT TGTCTGTTTG TTTGTGTCTG TGGCGGTGGG
  ATTTAGCCAT TACACTATAA AATTAGAAGC AACATTAGGG TCTTCTAGCA TGCATTGATC
  K
  GTATATCATT GTTGCCTAAT TTTTTTTTTT TTCTGCTGTG GACGAGTTAC AGTTTCAATA
  AAGACTATAT GACCCATACA TCCTAAAATA TTTTCTGTCT AGTTCTGTAG AGAAAAACCA
  GGTCAAGTTT GCTTCCCAGT ACTTGGGAGG GGTGGGGGGG GACAGAGTCA GGTGAATCTG
  AGTTCTAGAC CAGCCAGAGC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324918811	CHEV_15_34028132	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231905432					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:34098523 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Mtdh	metadherin			Intron
				Noncoding-Transcript-Variant
Rr500667	regulatory region 500667			1158 bp distal
Tssr131017	transcription start site region 131017			1131 bp upstream
Tssr133963	transcription start site region 133963			1139 bp downstream