rs231913544 SNP Detail

Summary

• ID
  rs231913544
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117548545 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCTGCA CACAGAGAAC
  CTGTCTCACA GAACCCAAGC CTTGGGAGAT GAAGTAGCCC AATTGGGCTT GTGTGCAGTT
  TCATGGGATT GGGGCATGAG CAGGATGGGG GGATGGGAGG ACAGGGCAAA AGGCAAGCAG
  GCATGCACTC TTAGCTTAAA GCCCTGGGTT CCCTCCCCAG CACCTGTGGG AATGATGCTG
  Y
  ACTTGTGTAA TCCCAGCACT TTGGAGGTGA AGACAGGAGG GTCAGAAGTT CAAAACCGGG
  CGTGATGCCG CACGCCTTTA ATCCCAGCAC TCGGGAGGCA GAGGCAGGTG GATTTCTGAG
  TTCGAGGCCA GCCTGGTCTA CAGAGTGAGT TCCAGGACAG CCAGGGCTAT ACAGAGAAAC
  CCTGTCTCGA AAAAACCAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss381924222	MGP_WTSI_10_117149696	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231913544					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss381924222	MGP_WTSI_10_117149696	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117548545 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2237	CpG island 2237	1532 bp distal
Gm56970	predicted gene, 56970	1107 bp downstream
Gm67727	predicted gene, 67727	within coordinates
Mdm2	transformed mouse 3T3 cell double minute 2	1882 bp upstream
Rr385357	regulatory region 385357	89 bp downstream
Rr439591	regulatory region 439591	1893 bp distal
Rr439592	regulatory region 439592	1890 bp distal
Rr439593	regulatory region 439593	1743 bp distal
Rr439594	regulatory region 439594	1797 bp distal
Rr439595	regulatory region 439595	929 bp distal
Tssr95923	transcription start site region 95923	1693 bp downstream
Tssr95924	transcription start site region 95924	884 bp downstream
Tssr99467	transcription start site region 99467	1979 bp upstream
Tssr99468	transcription start site region 99468	1904 bp upstream
Tssr99469	transcription start site region 99469	1867 bp upstream