rs231926780 SNP Detail

Summary

• ID
  rs231926780
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119229475 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGGGTTTC TCTGTATAGC
  CCTGGCTGTC CTGGAGCTCA CTTTGTAGAG CAGGCTGGCC TCGAACTCAG AAATCCGTCT
  GCCTCTACCT CCCGAGTGCT GGGATTAAAG GCGTGCACCA CCACGCCCGG CCTAATTTTA
  TTTTTAAGTG TATGTGTGCA CACACGTGTG CATGCATGTG CATGCACACA GAGGTGTTTG
  Y
  GGAGATCAGG AGAGGAAGTC AATGTTCTTG AGGTTGGAAT TACAGACACT TGTGAATCGT
  CCAGTCTGGG TCCTGGGAAC CAACCAAATC CAGGTTCTCT GCAAAAAGAG CAAGTGCTTT
  TTACCGCTGA GCCATCCAAC CCCAGAGTCC CATCTTTTAA AAAGTCACCT CAGTTACCAT
  TTAGAAAGGG TGCTAGTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323219413	CHEV_9_119309527	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231926780					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119229475 () rs orientation: forward

Symbol	Name	Function Class
Acvr2b	activin receptor IIB	1709 bp upstream
Cpgi22474	CpG island 22474	1193 bp proximal
Gm53515	predicted gene, 53515	within coordinates
Gm69683	predicted gene, 69683	within coordinates
Rr688480	regulatory region 688480	808 bp proximal
Rr688481	regulatory region 688481	1049 bp proximal
Rr688482	regulatory region 688482	1554 bp proximal
Tssr87682	transcription start site region 87682	1672 bp upstream
Tssr87683	transcription start site region 87683	1747 bp upstream
Tssr87684	transcription start site region 87684	1817 bp upstream