rs231938713 SNP Detail

Summary

• ID
  rs231938713
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164751347 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGTAGATTC GATGATCTTG
  TCAATGGCAG AGCCTAGGTC TGAAGAGGAG GCTGTGCAGT CAGACACCAG CATGCTGGGG
  TCTGGGAGAA CACTGGAATG CACCAGAGCT GGGGGGCCAC CAGGCATCTC TGCTACTGGT
  CCCCGGGACA CAGAAGATGA ATCAGGGAGG CAGCCATGAG GCAAAGGGTC TGTTGAGATG
  Y
  TCTCAGATAC CTCCTCCTAG GTGTAGAAAG CAGAGGGCAG TTCAGGAGCC AGGCGTGAGG
  CAGGACAGAG CAGCCTGTAG ATACCCCAGA AACAACAAAT AAAGCCACCC ACCCACATTT
  CAGCCTTACA GAGGCCCAGG AGGGTTCTCC TGTGAGGGCC CACAGATATA GTCAGGAACT
  ACCCCAGGGG GGAAAGCAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356443453	MGP_WTSI_2_164734927	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231938713					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356443453	MGP_WTSI_2_164734927	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164751347 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12677	CpG island 12677	1067 bp proximal
Rr367365	regulatory region 367365	1085 bp upstream
Rr569758	regulatory region 569758	218 bp proximal
Rr569759	regulatory region 569759	326 bp proximal
Rr569760	regulatory region 569760	668 bp proximal
Rr569761	regulatory region 569761	1467 bp proximal
Rr569762	regulatory region 569762	1901 bp proximal
Rr569763	regulatory region 569763	1968 bp proximal
Tssr21686	transcription start site region 21686	2000 bp upstream
Tssr27593	transcription start site region 27593	1748 bp downstream
Tssr27594	transcription start site region 27594	1791 bp downstream
Tssr27595	transcription start site region 27595	1831 bp downstream
Zfp335	zinc finger protein 335	Coding-NonSynonymous