rs231946399 SNP Detail

Summary

• ID
  rs231946399
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:90624002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAAAAATTG TTTCTCCATA TGAAAACAAA
  AAACTTATTT TTTTATTCAA GCAAAGAACC TATAGACATA AGGCTATTTC AAAATTATTT
  CAGTTTTAGA AAGAATTGAA AGTTTTGTAG CATTCTGAGA AGACAGCTTT CATTTGTAAT
  Y
  ATAGGTAATA TGTAGGTCCT CAGAAATGGT GAGACCCCTG ACTTTGACAC TTGGGGACTC
  TGAGGGACCA GTGATGAAGA GGGCACAACT TATATCACAC ATGCACGAGT TGGGGTGAGA
  GGGTGTCACA ACATCTATCA GTGTGTCATC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321607320	CHEV_5_90905169	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231946399					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:90624002 () rs orientation: forward

Symbol	Name	Function Class
Alb	albumin	within coordinates
Rr123615	regulatory region 123615	1260 bp distal
Rr123616	regulatory region 123616	within coordinates
Tssr47120	transcription start site region 47120	1461 bp downstream
Tssr47121	transcription start site region 47121	831 bp downstream
Tssr47122	transcription start site region 47122	323 bp upstream
Tssr51773	transcription start site region 51773	1498 bp upstream
Tssr51774	transcription start site region 51774	1438 bp upstream
Tssr51775	transcription start site region 51775	807 bp upstream
Tssr51776	transcription start site region 51776	343 bp downstream
Tssr51777	transcription start site region 51777	371 bp downstream
Tssr51778	transcription start site region 51778	384 bp downstream
Tssr51779	transcription start site region 51779	443 bp downstream