rs231947616 SNP Detail

Summary

• ID
  rs231947616
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:99537843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCACATCCA GATCTTGATG
  ATCTGAGGTC CGAGGTGACA TTTCTTTGGA AAATTAAAAG CAAAATATAC GACTCCTATT
  CACTGACTGA GGTGAATGGT TCTATGAACC ATTTCATTTA CCTGGGGCTT GATCTTTTTC
  TGACTTCCTT TTTTTTCAAT GTCAAAAAAA AAATCAAGAG AAAGCGTTCG TTATATTAGA
  R
  AAGAGAGCTG GGGGAAAGAT AGGCGTCTGG TCAGTAGCTG GATTGATTAT GTATGTTCTT
  AAACAATCAG GGCCTGGAAG ATATTTGGTT ATTTTATTCT GGTAGTTTTC GCTCAGGAGA
  TAGCAAGATG ACTGCGCTTT TTACAGAGGA AGGGGGAATG TAGCATTGGC CCACGGAGAG
  GACATGATAA ATGTTTTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392198153	MGP_WTSI_14_99699626	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231947616					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392198153	MGP_WTSI_14_99699626	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:99537843 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6800	CpG island 6800	557 bp distal
Klf5	Kruppel-like transcription factor 5	within coordinates
Rr291012	regulatory region 291012	1158 bp proximal
Rr297571	regulatory region 297571	within coordinates
Tssr126881	transcription start site region 126881	1692 bp downstream
Tssr126882	transcription start site region 126882	1418 bp downstream
Tssr126883	transcription start site region 126883	1227 bp upstream
Tssr126884	transcription start site region 126884	1256 bp upstream
Tssr126885	transcription start site region 126885	1281 bp upstream
Tssr126886	transcription start site region 126886	1396 bp upstream
Tssr126887	transcription start site region 126887	1492 bp upstream
Tssr126888	transcription start site region 126888	1574 bp upstream