rs231949520 SNP Detail

Summary

• ID
  rs231949520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103271263 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCAGCAATT CAGACTGCTA
  CAAAATTAAA CACATGATTT TTTTCAATTG ATGGACTGAG TGTGGCCTAA CACCCGCCCC
  AGTATGAGTA ACTCTTACCC AGTCAGAAGC AGGCACTCTA GGACAGATGG TAGTTCTTCC
  TCCACATTGC GCTTGAGCAG CAAGAAGGGA TTTGGGGGTA AGGGTAGGGT AGAGAATCTC
  Y
  GCCCTTCCTG GGTCTCAGTC TTGCCAGGGT TTGGGTTGGA GCTTCAGCAC TGAGTCTGTA
  TTCTCTAGCC TTCAGATTCT TCCTGGCTGC ACCCAAGAGA TCCCTGGGTC TCCGATTTAT
  CAACTGTTTC TCCCAGGGCC TGTCAGCCTC CACAGTGTTG TGAACCAACC ACTGTAATGA
  GTAAATAACA CGCCCCTCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392295525	MGP_WTSI_14_103433044	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231949520					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	T	T	C	C	C	T	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392295525	MGP_WTSI_14_103433044	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103271263 () rs orientation: forward

Symbol	Name	Function Class
4933432I03Rik	RIKEN cDNA 4933432I03 gene	24 bp upstream
Rr404263	regulatory region 404263	114 bp downstream
Rr404264	regulatory region 404264	304 bp upstream
Rr496958	regulatory region 496958	316 bp distal
Rr496959	regulatory region 496959	within coordinates
Rr496960	regulatory region 496960	348 bp proximal
Tssr4511	transcription start site region 4511	77 bp downstream
Tssr126967	transcription start site region 126967	65 bp downstream
Tssr126968	transcription start site region 126968	11 bp upstream
Tssr130069	transcription start site region 130069	323 bp upstream
Tssr130070	transcription start site region 130070	302 bp upstream