rs231963078 SNP Detail

Summary

• ID
  rs231963078
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135775232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGCCTTTA GTGGCCCATG
  CTGATCATAG CTCTGTTAGT CCCCTGTGTG GGCTGCTTTG TGTATCCTGG AGCATCTTCT
  TTTAGCTAAA GGCGCACAAG CATATGAGGA AATCAAGGAT CAGAGATCCA CCTAGGGACG
  CCATCTTAGC TCCGCTCTTC TGTTTTCTAG CTGTGTAGTT TTAAGCCTTG GTTTTCCTAA
  W
  GGAGGTCAGC ACTGCCCCCT TCAGGGATCT AGTGAGAGGA CAGATATGAA ATTACCTCCG
  TGAATGTCTG AGCAAGTGAG GTAGACATTG GTGTGGACAT TATGACAGAG GTGAACATTC
  CTGCAGGATA AAGTCCCCAG AGGCTCCAGG AACGCATAGT CCCTCATGTC CCCAGTTGCT
  CTGGTGACCC CTGACTCTCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss351552026	MGP_WTSI_1_137744071	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231963078					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss351552026	MGP_WTSI_1_137744071	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135775232 () rs orientation: forward

Symbol	Name	Function Class
Rr12644	regulatory region 12644	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr225	transcription start site region 225	243 bp upstream
Tssr226	transcription start site region 226	512 bp downstream
Tssr227	transcription start site region 227	1946 bp downstream
Tssr9011	transcription start site region 9011	1892 bp downstream
Tssr9012	transcription start site region 9012	1876 bp downstream
Tssr9013	transcription start site region 9013	1590 bp downstream
Tssr9014	transcription start site region 9014	764 bp downstream
Tssr9015	transcription start site region 9015	208 bp upstream
Tssr9016	transcription start site region 9016	479 bp upstream
Tssr9017	transcription start site region 9017	495 bp upstream
Tssr9018	transcription start site region 9018	540 bp upstream
Tssr9019	transcription start site region 9019	565 bp upstream
Tssr9020	transcription start site region 9020	1311 bp upstream
Tssr9021	transcription start site region 9021	1363 bp upstream
Tssr9022	transcription start site region 9022	1849 bp upstream
Tssr9023	transcription start site region 9023	1868 bp upstream
Tssr9024	transcription start site region 9024	1962 bp upstream
Tssr13889	transcription start site region 13889	1887 bp upstream
Tssr13890	transcription start site region 13890	262 bp downstream
Tssr13891	transcription start site region 13891	519 bp downstream
Tssr13892	transcription start site region 13892	559 bp downstream
Tssr13893	transcription start site region 13893	597 bp downstream
Tssr13894	transcription start site region 13894	1354 bp downstream
Tssr13895	transcription start site region 13895	1364 bp downstream
Tssr13896	transcription start site region 13896	1884 bp downstream
Tssr13897	transcription start site region 13897	1955 bp downstream