rs231965459 SNP Detail

Summary

• ID
  rs231965459
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:121990942 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTGCTGTT TGTTCTCTCT
  TCCCTCGAGC AGCCTCATTC CCAAGTGAGA TCTGAAAACC TTAAAATTAC ATTACCAGGG
  CTGGAGAGAT GGCTCAGCCA TTAAGAGTAT TTATGGTGCT TACAGAGGAC CAGAGTTTGG
  CTCCCAGTAC TCACATCAGG TAGTTCACAA CTACTTGTAA CTCCAGCTCC AGGGAATTTG
  M
  TCCACCTCTC TGGCCTCTGT GGGCACCTCC ATACATGACA CACACTCGAG CACAAACATA
  CTCACACATA ACTCAAGATT AAACATTTAA AAATTAGATT ACCACCTGAA GTTTAAAAGA
  ATCCCATCCC AAATAAAATA ATAAAAGGGG TTGGCAGGTC ATTCCAATCC AATCAGAGTT
  TGTCTATCTC AGACGCGAAT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355480928	MGP_WTSI_2_121986197	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231965459					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355480928	MGP_WTSI_2_121986197	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:121990942 () rs orientation: forward

Symbol	Name	Function Class
Patl2	protein associated with topoisomerase II homolog 2 (yeast)	Intron
Rr373780	regulatory region 373780	within coordinates
Rr563916	regulatory region 563916	1621 bp distal
Rr563917	regulatory region 563917	149 bp proximal
Rr563918	regulatory region 563918	250 bp proximal
Rr563919	regulatory region 563919	396 bp proximal
Rr563920	regulatory region 563920	1005 bp proximal
Trim69	tripartite motif-containing 69	247 bp upstream
Tssr626	transcription start site region 626	235 bp upstream
Tssr19830	transcription start site region 19830	222 bp upstream
Tssr19831	transcription start site region 19831	240 bp upstream
Tssr19832	transcription start site region 19832	1081 bp upstream