rs231978369 SNP Detail

Summary

• ID
  rs231978369
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:46120185 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGTGGTG TGTGTGTGTG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTTTGTGGT GTAGGACACA TTATCTATTC
  TCAGGTTTTG AAATACCGTG CACACATCCA CGGTTGCTTA AATAGAACTA CAACTGTTCC
  CTCTCACCGC CCCCCCCCGC CCCCACTCCC TATAAACTGT GTTGTTCACT TGAGGATCCG
  Y
  GATTATTAGA CTTCATATGC TAAAGTGACA TTGTTGGTCT CATTACAGCC TCTAGTGGAC
  GGTTAACGTT GAGTTTCCTG TCGGGGCTCT GTCTAGTTTT GTTTTCCCTC CTGAGCTTTA
  TCCAGGTGAA GGTTAACAGT TCAGAGCTTA ACTGACTGGT GTCTTTTCGC TCCCTCTTGG
  TAAAGCTGTC TTTGAAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss388492001	MGP_WTSI_13_46062078	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231978369					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss388492001	MGP_WTSI_13_46062078	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:46120185 () rs orientation: forward

Symbol	Name	Function Class
5033430I15Rik	RIKEN cDNA 5033430I15 gene	201 bp downstream
Atxn1	ataxin 1	1718 bp upstream
Cpgi5536	CpG island 5536	406 bp distal
Gm56575	predicted gene, 56575	413 bp upstream
Rr403752	regulatory region 403752	1509 bp downstream
Rr478835	regulatory region 478835	1406 bp distal
Rr478836	regulatory region 478836	424 bp distal
Rr478837	regulatory region 478837	467 bp distal
Rr478838	regulatory region 478838	within coordinates
Rr478839	regulatory region 478839	42 bp proximal
Tssr119584	transcription start site region 119584	1478 bp downstream
Tssr119585	transcription start site region 119585	1233 bp downstream
Tssr122340	transcription start site region 122340	1708 bp upstream
Tssr122341	transcription start site region 122341	384 bp upstream