rs231979558 SNP Detail

Summary

• ID
  rs231979558
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:152733044 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTAGAAA TCCGCCTGTC
  TCTGCCTCCC GAGTGCTGGG ATTAAAGGCA TGCGTCACCA CTCCTGGCCA AATAATAAAT
  TTATAAGTTT ATTTATTAAT GAATATTATT ATGCATAGAT TTATCACAGC CATGGAGAAG
  TAGCTTAAAA CACCCACATC TCGGAGTTTT AGCTGTGCAG TGGCGGGCTG TGTGCTGTGG
  Y
  GGGCCGTGTG CAGTGGTGGG CCGTGTCAGC CCCCGAGTAC AGGCGTTTTC CTTTGCTCCG
  ATTTCTGGAC CAGAGCTGTG ACAGTCTTCT GTCTCCCTGG GAGAAGCGCC TGCCTCTGCC
  ATCTGCTCCA TCCAACAGTG AGCCAGGTGA AAAAAAATCA CTGAGAGGAA ATAGGAAGTC
  AGGCTGAGAC AAGCTGCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321435536	CHEV_4_152022696	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231979558					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:152733044 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15417	CpG island 15417	1351 bp distal
Gm69406	predicted gene, 69406	within coordinates
Gm69411	predicted gene, 69411	1909 bp upstream
Rr87959	regulatory region 87959	444 bp distal
Rr93365	regulatory region 93365	1044 bp distal
Rr97434	regulatory region 97434	395 bp distal
Rr103964	regulatory region 103964	1958 bp proximal