rs231986709 SNP Detail

Summary

• ID
  rs231986709
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:36006366 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTTCAAGGAT ATTAAATGGA
  ATTAAGGGAG TGAAGGCCTC AGAGCAATAT CTTACCCAGT CAAGTTTATT GTTTATGTGT
  TTGCAGTTCA ACAAGGGCTA GTTATATCAT GTTAGGCATT TTTATTACCT GGTTATTGTT
  TTCATTTGGA CTTTTAATCT GAAATGAATA CAAACTAGAA ATGGAGGGCA CACCAGTGAT
  M
  CAGATCTTGA GGCTGGAAGA CATAGGCTTT TGAGTCATAT CTTGAAGCAT GGTGGCCATG
  AAAAGCTTAA GTCCAGGCAT AGTGGTACAT GCCTCTAATC CTTGGAGACA GAGACAAACA
  GATCTATGAG TTAGGAGGCA GCCTGATACA GAACAGATGC CAAGTAAATG AAGGCTTTGG
  TCCAAGTATG GCGGACTATG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321084828	CHEV_4_35953399	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs231986709					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:36006366 () rs orientation: forward

Symbol	Name	Function Class
Lingo2	leucine rich repeat and Ig domain containing 2	within coordinates
Tssr41223	transcription start site region 41223	359 bp upstream