rs231993696 SNP Detail

Summary

• ID
  rs231993696
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:116202763 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGGAGGAA AGGGTTTATT
  CGGCTTACAC TTCCACACTG CTGTTCATCA CCAAAGGAAG TCAGGACTGG AACTCAAGCA
  GGTCAGGAAG CAGGAGCTGA TGCAGAACCC ATGGAGGGAT GTTCTTTACT GGCTTGCTTC
  CCCTGGCTTG CTCAGCCTGC TCTCTTAAAG AACCCAAGAC TACCAGCCCA GAGATGGTCC
  Y
  ACCCACAAGG GGCCTTTTTT CCTTGATCAC TAATTGAGAA AATTCCTTAC AGCTGAATCT
  CGTGGTGGCA TCTCCCCAAC TGAAGCTCCT TTCTCTGTGA TAACTCCAGC CTGTGTCAAG
  TTGGCACCCA AAACCAGCCA GTACACCCTT TAAAGATGAT AAAAAAGTCA GAAAGAAAAA
  GATTTGTTTG TTATGCTGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369768303	MGP_WTSI_6_116175820	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs231993696					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	C	T	C	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369768303	MGP_WTSI_6_116175820	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:116202763 () rs orientation: forward

Symbol	Name	Function Class
Tssr58357	transcription start site region 58357	456 bp upstream
Tssr58358	transcription start site region 58358	1164 bp upstream
Washc2	WASH complex subunit 2	within coordinates