rs232007380 SNP Detail

Summary

• ID
  rs232007380
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:46344712 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGAGTGG GGTGTGGGAT
  TAGAGTTTTA AGGGCTCATA CCAGAGAGGC ACAATCCTCC TTTCTGATGA CCACGTAGAG
  TCTGGTTCCC CCCCCCCCCG CCTTTTTCCC TTCCCTCTAA GTTCCAGGTA CAGTGAACAA
  ACGTAGCCGC AGTTAAGCAC CGTTTCTTCC AACCCAGACC AGCAGAGCCC TCTCAGTATT
  Y
  CCCGACACAC CTCGCCTGAA CACCACTCAG AGGCGTCTCT GGGCAGTTTC TCAGACGCCC
  CCTGAGGTCC AGCTTCTTGA AAGCTTTTCC ACTTAGGCGA AGCCATCCAG CTAACGCTCT
  GAACCACTCC CAGCTTGTGT CCCAAAGATT TCAGGAGAAG TCTGGGGCTG GCATCTCGCC
  AGTCCACAGC TCCCTCTACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325609386	CHEV_18_46371299	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232007380					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:46344712 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10017	CpG island 10017	98 bp proximal
Rr345901	regulatory region 345901	1912 bp distal
Rr352866	regulatory region 352866	within coordinates
Trim36	tripartite motif-containing 36	within coordinates
Tssr153216	transcription start site region 153216	806 bp downstream
Tssr153217	transcription start site region 153217	924 bp downstream
Tssr153218	transcription start site region 153218	950 bp downstream
Tssr153219	transcription start site region 153219	1168 bp downstream