rs232011355 SNP Detail

Summary

• ID
  rs232011355
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:83007662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTGACGCT GTAAAGGTTA
  AGTTCAAAAG TCTAGAAGCC TTGTTCTTCA GTTCTGACAG GTGGAGTGGC AATCACAGAG
  GGGATGAAAG AGCTGAAGGA GATGTCTCAC ACTTCCTGGA GTGACATCAA CCAATGAAAC
  CGGGGTTCTC CAAAACTGAA ATCGGGACCT AGAGAGGATG AAACAGTGCA ATCCACTAAG
  R
  TCGGTCAAGA CAAAAGCCGA GAGCAACCAC AGGCACTGTA GCTCATCCCT CAAATCCAAG
  TGCTGAGAAG GACTTCTGGA GACAGCCACC ACTCCCACTG CTGTGGGTGT CTCAAGCTTT
  TGCCTTACTT CCTCTGGCCC GCAAGTGTCC ACAGCACAGC TAGCTCACAG CTAGCTCGCA
  GTTGACTTCA AGCAGCTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323766843	CHEV_11_82930338	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232011355					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:83007662 () rs orientation: forward

Symbol	Name	Function Class
Gm53233	predicted gene, 53233	within coordinates
LxMm-9c11	LINE repeat x, subfamily 9, member c11	1125 bp distal
Rr237031	regulatory region 237031	1262 bp distal
Rr247350	regulatory region 247350	within coordinates
Slfn1	schlafen 1	13 bp upstream
Tssr103652	transcription start site region 103652	147 bp downstream
Tssr103653	transcription start site region 103653	39 bp downstream
Tssr103654	transcription start site region 103654	within coordinates
Tssr103655	transcription start site region 103655	32 bp upstream
Tssr103656	transcription start site region 103656	77 bp upstream
Tssr103657	transcription start site region 103657	116 bp upstream
Tssr103658	transcription start site region 103658	138 bp upstream
Tssr103659	transcription start site region 103659	167 bp upstream
Tssr103660	transcription start site region 103660	1493 bp upstream
Tssr109644	transcription start site region 109644	244 bp upstream