rs232014922 SNP Detail

Summary

• ID
  rs232014922
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82221892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGACTTGTA AATGGTTCCT ACAGCACCCC
  ACCCCCCAAC CCCAGTCATC ACCTCAACCC CTCCAGCCCT TCAGCCCTCC CCAGGTACAG
  GCCAGTAGGG TTAGAGTTGC CTCAGCCTGT GAGTGCAGTC TGGGGGGGGG GGTACATGGG
  R
  CAAAGTAATG TATTCAAAAA GCTGTTGCTA CAGACTGGGA ATCAATGGAA CGGACCCCTG
  AAGTCATGTC CTTGATATAC ATGAGACCAG ATGCCCTCTT CCCTCCCTCC CTACACAGAA
  ATGACAGTTC ATTGTGGACT CTGGGTTTCT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325034234	CHEV_15_82168121	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232014922					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82221892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	960 bp proximal
Naga	N-acetyl galactosaminidase, alpha	within coordinates
Pheta2	PH domain containing endocytic trafficking adaptor 2	1256 bp upstream
Rr506479	regulatory region 506479	1081 bp proximal
Rr506480	regulatory region 506480	1279 bp proximal
Rr506481	regulatory region 506481	1413 bp proximal
Tssr4669	transcription start site region 4669	1173 bp downstream
Tssr135542	transcription start site region 135542	671 bp upstream
Tssr135543	transcription start site region 135543	1079 bp downstream
Tssr135544	transcription start site region 135544	1110 bp downstream
Tssr135545	transcription start site region 135545	1166 bp downstream