rs232015821 SNP Detail

Summary

• ID
  rs232015821
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:106340086 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTT CCAGATCTTC TCTCTTATTT
  C
  TCCCCTTAAC TTGTCTTGTG TCTGC                                      
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323185267	CHEV_9_106365218	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232015821					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:106340086 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22267	CpG island 22267	241 bp distal
Cpgi22268	CpG island 22268	1599 bp proximal
Gpr62	G protein-coupled receptor 62	1075 bp downstream
Pcbp4	poly(rC) binding protein 4	within coordinates
Tssr86914	transcription start site region 86914	992 bp downstream
Tssr86915	transcription start site region 86915	266 bp upstream
Tssr86916	transcription start site region 86916	370 bp upstream
Tssr86917	transcription start site region 86917	493 bp upstream
Tssr86918	transcription start site region 86918	626 bp upstream
Tssr86919	transcription start site region 86919	896 bp upstream
Tssr91318	transcription start site region 91318	1998 bp downstream