rs232016254 SNP Detail

Summary

• ID
  rs232016254
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:69048920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTCCTGGGCG CTGACTCTTT TGCCCCCAAG ATTCTAAATA
  GCTCCTGCAG CCTCAAGCGA CTGGGACCTT AGGAAGGATG GATAAGGCAG GGGTCTTTCC
  M
  TGCCTTGGGT AAATGGGCCC AGCAGAGGGC AGCCAAGTCA GGGGGTTCAC ATCTGTGCCT
  TCTCTTTATC CTTGCTCTGT GCACTCCTCA GTCCAGCAG                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323727822	CHEV_11_68971596	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232016254					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:69048920 () rs orientation: forward

Symbol	Name	Function Class
Alox12b	arachidonate 12-lipoxygenase, 12R type	within coordinates
Cpgi3111	CpG island 3111	759 bp distal
Rr449891	regulatory region 449891	1095 bp distal
Rr449892	regulatory region 449892	824 bp distal
Rr449893	regulatory region 449893	15 bp proximal
Tssr102419	transcription start site region 102419	1193 bp downstream
Tssr102420	transcription start site region 102420	1178 bp downstream
Tssr102421	transcription start site region 102421	1043 bp downstream
Tssr102422	transcription start site region 102422	1033 bp downstream
Tssr102423	transcription start site region 102423	1013 bp downstream
Tssr102424	transcription start site region 102424	984 bp downstream