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rs232020143 SNP Detail
Summary
  • ID
    rs232020143
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr7:44128906 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                          CCTGC CTTTTCATTT ACTATTCTTT
Y
CCCCTTCTCC TCTTCTTCTT CAATC                                      

Y = C/T

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID		 Submitter
Handle		 Population
ss orientation
 Variation Type
LG/J
SM/J
ss322198935 CHEV_7_51734852 CHEVERUD SCREENING_POP f SNP C T
SNP Consensus Information
SNP Consensus Type
LG/J
SM/J
rs232020143 SNP C T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr7:44128906 () rs orientation: forward
Symbol Name Transcript Protein Function
Class		 Allele Residue Codon
Position		 AA
Position
Tssr2226 transcription start site region 2226 1537 bp downstream
Tssr2227 transcription start site region 2227 462 bp downstream
Tssr2228 transcription start site region 2228 596 bp upstream
Tssr2229 transcription start site region 2229 872 bp upstream
Tssr2230 transcription start site region 2230 1051 bp upstream
Tssr2231 transcription start site region 2231 1184 bp upstream
Tssr2232 transcription start site region 2232 1359 bp upstream
Tssr2233 transcription start site region 2233 1392 bp upstream
Tssr2234 transcription start site region 2234 1551 bp upstream
Tssr66246 transcription start site region 66246 1994 bp downstream
Tssr66247 transcription start site region 66247 1947 bp downstream
Tssr66248 transcription start site region 66248 1906 bp downstream
Tssr66249 transcription start site region 66249 1883 bp downstream
Tssr66250 transcription start site region 66250 1864 bp downstream
Tssr66251 transcription start site region 66251 1839 bp downstream
Tssr66252 transcription start site region 66252 1808 bp downstream
Tssr66253 transcription start site region 66253 1780 bp downstream
Tssr66254 transcription start site region 66254 1732 bp downstream
Tssr66255 transcription start site region 66255 1705 bp downstream
Tssr66256 transcription start site region 66256 1656 bp downstream
Tssr66257 transcription start site region 66257 1645 bp downstream
Tssr66258 transcription start site region 66258 1602 bp downstream
Tssr66259 transcription start site region 66259 1566 bp downstream
Tssr66260 transcription start site region 66260 1459 bp downstream
Tssr66261 transcription start site region 66261 1438 bp downstream
Tssr66262 transcription start site region 66262 1431 bp downstream
Tssr66263 transcription start site region 66263 1419 bp downstream
Tssr66264 transcription start site region 66264 1395 bp downstream
Tssr66265 transcription start site region 66265 1352 bp downstream
Tssr66266 transcription start site region 66266 1335 bp downstream
Tssr66267 transcription start site region 66267 1298 bp downstream
Tssr66268 transcription start site region 66268 1282 bp downstream
Tssr66269 transcription start site region 66269 1246 bp downstream
Tssr66270 transcription start site region 66270 1211 bp downstream
Tssr66271 transcription start site region 66271 1179 bp downstream
Tssr66272 transcription start site region 66272 1127 bp downstream
Tssr66273 transcription start site region 66273 1109 bp downstream
Tssr66274 transcription start site region 66274 1104 bp downstream
Tssr66275 transcription start site region 66275 1084 bp downstream
Tssr66276 transcription start site region 66276 1064 bp downstream
Tssr66277 transcription start site region 66277 1044 bp downstream
Tssr66278 transcription start site region 66278 1000 bp downstream
Tssr66279 transcription start site region 66279 955 bp downstream
Tssr66280 transcription start site region 66280 933 bp downstream
Tssr66281 transcription start site region 66281 893 bp downstream
Tssr66282 transcription start site region 66282 876 bp downstream
Tssr66283 transcription start site region 66283 862 bp downstream
Tssr66284 transcription start site region 66284 850 bp downstream
Tssr66285 transcription start site region 66285 836 bp downstream
Tssr66286 transcription start site region 66286 797 bp downstream
Tssr66287 transcription start site region 66287 761 bp downstream
Tssr66288 transcription start site region 66288 736 bp downstream
Tssr66289 transcription start site region 66289 654 bp downstream
Tssr66290 transcription start site region 66290 616 bp downstream
Tssr66291 transcription start site region 66291 590 bp downstream
Tssr66292 transcription start site region 66292 558 bp downstream
Tssr66293 transcription start site region 66293 536 bp downstream
Tssr66294 transcription start site region 66294 512 bp downstream
Tssr66295 transcription start site region 66295 247 bp downstream
Tssr66296 transcription start site region 66296 76 bp downstream
Tssr66297 transcription start site region 66297 52 bp downstream
Tssr66298 transcription start site region 66298 within coordinates
Tssr66299 transcription start site region 66299 20 bp upstream
Tssr66300 transcription start site region 66300 27 bp upstream
Tssr66301 transcription start site region 66301 51 bp upstream
Tssr66302 transcription start site region 66302 65 bp upstream
Tssr66303 transcription start site region 66303 106 bp upstream
Tssr66304 transcription start site region 66304 114 bp upstream
Tssr66305 transcription start site region 66305 124 bp upstream
Tssr66306 transcription start site region 66306 158 bp upstream
Tssr66307 transcription start site region 66307 215 bp upstream
Tssr66308 transcription start site region 66308 268 bp upstream
Tssr66309 transcription start site region 66309 289 bp upstream
Tssr66310 transcription start site region 66310 327 bp upstream
Tssr66311 transcription start site region 66311 404 bp upstream
Tssr66312 transcription start site region 66312 420 bp upstream
Tssr66313 transcription start site region 66313 441 bp upstream
Tssr66314 transcription start site region 66314 449 bp upstream
Tssr66315 transcription start site region 66315 469 bp upstream
Tssr66316 transcription start site region 66316 528 bp upstream
Tssr66317 transcription start site region 66317 540 bp upstream
Tssr66318 transcription start site region 66318 585 bp upstream
Tssr66319 transcription start site region 66319 608 bp upstream
Tssr66320 transcription start site region 66320 635 bp upstream
Tssr66321 transcription start site region 66321 653 bp upstream
Tssr66322 transcription start site region 66322 673 bp upstream
Tssr66323 transcription start site region 66323 719 bp upstream
Tssr66324 transcription start site region 66324 748 bp upstream
Tssr66325 transcription start site region 66325 778 bp upstream
Tssr66326 transcription start site region 66326 819 bp upstream
Tssr66327 transcription start site region 66327 833 bp upstream
Tssr66328 transcription start site region 66328 849 bp upstream
Tssr66329 transcription start site region 66329 888 bp upstream
Tssr66330 transcription start site region 66330 907 bp upstream
Tssr66331 transcription start site region 66331 921 bp upstream
Tssr66332 transcription start site region 66332 942 bp upstream
Tssr66333 transcription start site region 66333 990 bp upstream
Tssr66334 transcription start site region 66334 1002 bp upstream
Tssr66335 transcription start site region 66335 1011 bp upstream
Tssr66336 transcription start site region 66336 1020 bp upstream
Tssr66337 transcription start site region 66337 1038 bp upstream
Tssr66338 transcription start site region 66338 1094 bp upstream
Tssr66339 transcription start site region 66339 1145 bp upstream
Tssr66340 transcription start site region 66340 1190 bp upstream
Tssr66341 transcription start site region 66341 1235 bp upstream
Tssr66342 transcription start site region 66342 1297 bp upstream
Tssr66343 transcription start site region 66343 1329 bp upstream
Tssr66344 transcription start site region 66344 1474 bp upstream
Tssr66345 transcription start site region 66345 1507 bp upstream
Tssr66346 transcription start site region 66346 1563 bp upstream
Tssr66347 transcription start site region 66347 1601 bp upstream
Tssr66348 transcription start site region 66348 1642 bp upstream
Tssr66349 transcription start site region 66349 1666 bp upstream
Tssr66350 transcription start site region 66350 1694 bp upstream
Tssr66351 transcription start site region 66351 1702 bp upstream
Tssr66352 transcription start site region 66352 1738 bp upstream
Tssr66353 transcription start site region 66353 1812 bp upstream
Tssr66354 transcription start site region 66354 1826 bp upstream
Tssr66355 transcription start site region 66355 1853 bp upstream
Tssr66356 transcription start site region 66356 1870 bp upstream
Tssr66357 transcription start site region 66357 1884 bp upstream
Tssr66358 transcription start site region 66358 1896 bp upstream
Tssr66359 transcription start site region 66359 1922 bp upstream
Tssr66360 transcription start site region 66360 1934 bp upstream
Tssr66361 transcription start site region 66361 1960 bp upstream
Tssr66362 transcription start site region 66362 1992 bp upstream
Tssr72199 transcription start site region 72199 1999 bp upstream
Tssr72200 transcription start site region 72200 1041 bp upstream
Tssr72201 transcription start site region 72201 531 bp upstream
Tssr72202 transcription start site region 72202 311 bp downstream
Tssr72203 transcription start site region 72203 697 bp downstream
Tssr72204 transcription start site region 72204 1293 bp downstream
Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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Send questions and comments to User Support. 		last database update
12/17/2024
MGI 6.24 		The Jackson Laboratory