rs232026180 SNP Detail

Summary

• ID
  rs232026180
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30826588 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGGGCTC CCGGCGCTGG
  GGTGCGGACC GCGGGCTCCT GCGCACTGCA GCGGCGGCCC GGGAGGGAGG AGGGAGACGG
  AGGAGGGAGG AGGGAGCGGG AGGGGGCGGG ATGAATCACC GCGGGGGGAG GGCGCGGCCG
  CCCAGCCTTT GCCGCAGCGG CCCGGGAGGC GCCCGGGCAC CGGCCTCTCC GGTGGCTTCG
  Y
  GGCTTCTGCA CACCCGTTGC ATGGTCTAGG TCATTCCGGC TTCACCAGAC TCTCTGGGGG
  TGTCGGAACC CTTTCCTCTT CCTCTTCTGA GAAAGGTCAT CTCTAGACAC CCAAGAGGAC
  TTGGAGGACA GTTTGAGGGA CCAATTTCCG TCTTCCTAAT TATAGAGGTT AACCTTATCC
  AGTTCTTGGG GAGATAAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322139530	CHEV_7_31912182	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232026180					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30826588 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18836	CpG island 18836	1738 bp distal
Cpgi18837	CpG island 18837	within coordinates
Rr645025	regulatory region 645025	330 bp distal
Rr645026	regulatory region 645026	within coordinates
Rr645027	regulatory region 645027	1331 bp proximal
Scn1b	sodium channel, voltage-gated, type I, beta	160 bp upstream
Tssr71935	transcription start site region 71935	438 bp upstream
Tssr71936	transcription start site region 71936	391 bp upstream
Tssr71937	transcription start site region 71937	229 bp upstream
Tssr71938	transcription start site region 71938	171 bp upstream
Tssr71939	transcription start site region 71939	121 bp upstream
Tssr71940	transcription start site region 71940	1 bp downstream