rs232029336 SNP Detail

Summary

• ID
  rs232029336
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:24605196 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAAATTCA TTAACATCTG
  TAGACAGACC CTGAACCCTG CATAGAAACT AAGCCTGTGT GTGCTGTCTT TGCTGTGTCT
  GACACATACT GAGAACACGT GAGTGTCAGC CATTGTTCCT TATTACTGTG ATGGGGAGTG
  TGGAGGCAAT GCATGTGAAC TGTGAACAAG AGAGTCAGGG TCTTCTGGTG ACAATTTGTT
  M
  AAATTTCGTA CCTCCCTTGG CTTCTCTTTT CTTGGGGGGG GGAGTTAATA AAGATTTAAG
  CGTGAGAGTT ACGGGGGCCA CTCTGAATGA TGTGTACAGG CCAGTATGGT GGCACACGCC
  TTTGATCCCA GCATTGGGAA GGAGGAGACA AGTGACTCTC TTGATTCAAG GCTGGCCTGC
  TCTGCAGAGT TCCAGGATAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322121042	CHEV_7_25690790	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232029336					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:24605196 () rs orientation: forward

Symbol	Name	Function Class
Arhgef1	Rho guanine nucleotide exchange factor 1	within coordinates
Cpgi18562	CpG island 18562	1055 bp distal
Rr370709	regulatory region 370709	1230 bp upstream
Rr400160	regulatory region 400160	1382 bp downstream
Rr643583	regulatory region 643583	1354 bp distal
Rr643584	regulatory region 643584	1426 bp distal
Rr643585	regulatory region 643585	120 bp distal
Rr643586	regulatory region 643586	618 bp distal
Rr643587	regulatory region 643587	913 bp proximal
Tssr65068	transcription start site region 65068	1519 bp downstream
Tssr65069	transcription start site region 65069	1420 bp downstream
Tssr65070	transcription start site region 65070	1394 bp downstream
Tssr65071	transcription start site region 65071	1360 bp downstream
Tssr65072	transcription start site region 65072	1312 bp downstream
Tssr65073	transcription start site region 65073	1535 bp upstream
Tssr65074	transcription start site region 65074	1562 bp upstream
Tssr65075	transcription start site region 65075	1847 bp upstream
Tssr65076	transcription start site region 65076	1898 bp upstream
Tssr71113	transcription start site region 71113	1630 bp upstream