rs232048442 SNP Detail

Summary

• ID
  rs232048442
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:17814232 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ACAGACCCT ACCTGTCCCT CATTGCTTGT
  AAAAACAAAT TAAACAGAGA TCCCAGCAAC TTCGGGGCAT GTGTGTGACT GTGCAACGAG
  CGCGTTGGAG AGAGCATCGC CCTAGAGTTC GGGCCACAGC TGCAGAAGCA CATCTGGAAA
  R
  GGGGGAGGGG TCGAAGCGGA GGGGACAAGA AGCCCCCAAA CGACTAGCTT CTGGGTGCAG
  AGCCTGTGTC ACCGGGGGTT GGTTACCTGT CCTACGTTGA TGAATCCGTA CTTGCTGGCT
  ATGCGATCTG CCTCCGCGAA GCCGCCGGCG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325730789	CHEV_19_17911358	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232048442					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:17814232 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10665	CpG island 10665	598 bp distal
Cpgi10666	CpG island 10666	within coordinates
Pcsk5	proprotein convertase subtilisin/kexin type 5	within coordinates
Rr544885	regulatory region 544885	within coordinates
Rr544886	regulatory region 544886	708 bp proximal
Rr544887	regulatory region 544887	754 bp proximal
Tssr158513	transcription start site region 158513	752 bp downstream