rs232076987 SNP Detail

Summary

• ID
  rs232076987
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:111884837 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACAGACTT AATGAACTAC
  TTCACACCTA TTTCTATTTC TTTTTTTCTG GTTTGAAGAG ATCACCTTTC CCTGAATATT
  CAACACGAAT GAAGGTGAAG TGAAAATACA GAACCATATT TTCCAAAAAA AAAAAAACCG
  AAATGAACGG GCCGACAGTA AAATGCACAG TGAACCACAA TAAACCAGGA GCTAAAAAAA
  R
  GGGGGGGGGG GTCAGCTGTG GGTTATAAAG AAGTTATTAA CTTTAAAAAC GCATGTATTT
  ACTGCTTCTC ATACACACTC TGACCAGGCA ATGATTTTTT TTTTTTACAG CCAGTGACAA
  AAAAACCAAA AAAACCAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAACCC AAAAACCTAA
  CCCAAAGGGA ATTGCAGAGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	CBA/J	FVB/NJ	I/LnJ	LG/J	NOD/ShiLtJ	NZB/BlNJ	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss389979317	MGP_WTSI_13_112538511	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/10J	C57BR/cdJ	C57L/J	CBA/J	FVB/NJ	I/LnJ	LG/J	NOD/ShiLtJ	NZB/BlNJ	QSi5/Ianm	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs232076987					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss389979317	MGP_WTSI_13_112538511	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:111884837 () rs orientation: forward

Symbol	Name	Function Class
Map3k1	mitogen-activated protein kinase kinase kinase 1	within coordinates
Rr486186	regulatory region 486186	1128 bp distal
Tssr124031	transcription start site region 124031	76 bp upstream
Tssr124032	transcription start site region 124032	124 bp downstream