rs232083439 SNP Detail

Summary

• ID
  rs232083439
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:108532842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATAATGCCA TTTAACCACC
  AAATTCTTTC TTTAAATGTA CTAGTCTTGC TCTCATTCAC CTTAAGCCCT CTACATGAAC
  TGTTCACTCC ACCAGAAGAG CTCTCCCTAC AAAACCCCAA ATAATAGTTG GCTGCCTGAA
  TTCTTCAAGT TTCCACTCCA ACTTGATACC CTCATTGTAT CCTACTCTAA CCCTTCATAA
  Y
  CTTTCATGCT CTCATAACCT CCACTGATCA TTTCTTTCTC ATAGCACAGT CAAATAGTAA
  TAATAATTTA CTGTGTATCG AAGCACTTTC TAACCTAATG TAGGATTTAG TCCTTTTCTC
  TCCCCCAAAG AGAATGCAAC CCTTTGCTAT TTAGTTCACT TATATACCCT AGCATATAAG
  AGAGAGTCTG GTGCATATTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322388624	CHEV_7_116077149	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs232083439					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:108532842 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19551	CpG island 19551	631 bp proximal
D7Mit127	DNA segment, Chr 7, Massachusetts Institute of Technology 127	701 bp distal
Eif3f	eukaryotic translation initiation factor 3, subunit F	780 bp upstream
Rr400539	regulatory region 400539	522 bp upstream
Rr652951	regulatory region 652951	932 bp distal
Rr652952	regulatory region 652952	292 bp proximal
Rr652953	regulatory region 652953	512 bp proximal
Tssr68456	transcription start site region 68456	770 bp upstream
Tssr68457	transcription start site region 68457	882 bp upstream